compound-eng-md-docs（复合工程医学博士文档）

Markdown Documentation

Manage project documentation by verifying against actual codebase state. Emphasize verification over blind generation -- analyze structure, files, and patterns before writing.

Portability

AGENTS.md is the universal context file (works with Claude Code, Codex, Kilocode). If the project uses CLAUDE.md, treat it as a symlink to AGENTS.md or migrate content into AGENTS.md and create the symlink:

# If CLAUDE.md exists and AGENTS.md doesn't
mv CLAUDE.md AGENTS.md && ln -sf AGENTS.md CLAUDE.md

When this skill references "context files", it means AGENTS.md (and CLAUDE.md if present as symlink).

Workflows

Update Context Files

Verify and fix AGENTS.md against the actual codebase. See update-agents.md for the full verification workflow.

1. Read existing AGENTS.md, extract verifiable claims (paths, commands, structure, tooling)
2. Verify each claim against codebase (ls, cat package.json, cat pyproject.toml, etc.)
3. Fix discrepancies: outdated paths, wrong commands, missing sections, stale structure
4. Discover undocumented patterns (scripts, build tools, test frameworks not yet documented)
5. Report changes

Update README

Generate or refresh README.md from project metadata and structure. See update-readme.md for section templates and language-specific patterns.

1. Detect language/stack from config files (package.json, pyproject.toml, composer.json)
2. Extract metadata: name, version, description, license, scripts
3. If README exists and --preserve: keep custom sections (About, Features), regenerate standard sections (Install, Usage)
4. Generate sections appropriate to project type (library vs application)
5. Report changes

Update CONTRIBUTING

Update existing CONTRIBUTING.md only -- never auto-create. See update-contributing.md.

When updating, detect project conventions automatically:

• Package manager from lock files (package-lock.json → npm, yarn.lock → yarn, pnpm-lock.yaml → pnpm, bun.lockb → bun)
• Branch conventions from git history (feature/, fix/, chore/ prefixes)
• Test commands from package.json scripts or pyproject.toml

Update DOCS

If DOCS.md exists, treat it as API-level documentation (endpoints, function signatures, type definitions). Verify against actual code the same way as AGENTS.md. Never auto-create DOCS.md -- only update existing.

Initialize Context

Create AGENTS.md from scratch for projects without documentation. See init-agents.md.

1. Analyze project: language, framework, structure, build/test tools
2. Generate terse, expert-to-expert context sections
3. Write AGENTS.md, create CLAUDE.md symlink

Context File Hierarchy

Structure CLAUDE.md (and AGENTS.md) content by priority so the most critical information loads first when context is compacted:

1. Rules -- project constraints, forbidden patterns, required conventions. Override everything else.
2. Tech stack -- languages, frameworks, versions, package managers.
3. Commands -- how to build, test, lint, deploy. Exact commands, not descriptions.
4. Conventions -- naming patterns, file organization, architectural decisions.
5. Boundaries -- what's off-limits, what requires approval, scope constraints.

Rules that prevent mistakes outweigh background information. Place them at the top so they survive aggressive context compaction.

Monorepo Context Loading

Claude Code's context-file loading in monorepos follows three rules -- understanding them determines where content belongs:

• Ancestors load immediately: walking UP from the current working directory, every AGENTS.md / CLAUDE.md encountered is loaded at startup. Put shared conventions at the repo root.
• Descendants load lazily: an AGENTS.md deeper in the tree loads only when Claude reads or edits a file inside that subtree. Put package-specific conventions at each package's root (packages/api/AGENTS.md, apps/web/AGENTS.md).
• Siblings never load: packages/a/AGENTS.md will NOT auto-load when working in packages/b/. Do not rely on sibling-package context leaking across.

Implication for monorepo layouts: duplicate any rule that must apply across sibling packages into each package's AGENTS.md (or hoist it to the repo root). The loader will not discover it laterally. Conversely, avoid putting package-specific rules at the root -- they'll load into every session regardless of relevance and burn context.

Arguments

All workflows support:

• --dry-run: preview changes without writing
• --preserve: keep existing structure, fix inaccuracies only
• --minimal: quick pass, high-level structure only
• --thorough: deep analysis of all files

Backup Handling

Before overwriting, back up existing files:

cp AGENTS.md AGENTS.md.backup
cp README.md README.md.backup

Never delete backups automatically.

Writing Style

• Lead with the answer. First sentence of each section states the conclusion; reasoning follows. No "In this section, we'll..." preamble.
• Imperative form for instructions: "Build the project" not "The project is built" — verify no passive voice in any directive sentence.
• Expert-to-expert: cut explanations of concepts the target reader already knows. For CLAUDE.md/AGENTS.md, assume familiarity with git, package managers, test runners, and the project's main language.
• Scannable: headings every ~20 lines, bullet lists for ≥3 parallel items, fenced code blocks for every command.
• Verify every command and path against the codebase. Run each command before committing; grep for each referenced path. Stale paths and untested commands are the most common doc defect.
• Sentence case headings, no emoji decoration (exception: changelog entries may use emoji per project convention).
• Actionable headings: "Set SAML before adding users" — not "SAML configuration timing". Reader should know what to do from the heading alone.
• Collapse depth with <details> blocks instead of deleting content (blank line required after <summary> for GitHub rendering).

README Anti-Patterns

Flag during Update README workflows:

• Framework-first lead (explaining the tech stack before the problem it solves)
• Jargon before definition (using project-specific terms without introduction)
• Theory before try (architecture explanation before a working example)
• Claims without evidence ("blazingly fast" with no benchmarks)

Report Format

After every operation, display a summary:

[OK] Updated AGENTS.md
  - Fixed build command
  - Added new directory to structure

[OK] Updated README.md
  - Added installation section
  - Updated badges

[--] CONTRIBUTING.md not found (skipped)

Verify

• Every factual claim in updated docs verified against current codebase
• No stale file paths or component names
• Formatting renders correctly in markdown preview