Amina CLI
Run autonomous protein engineering workflows via AminoAnalytica's Amina CLI.
Reference Loading
This skill uses progressive disclosure. Load references based on context:
At Session Start
When starting a new Amina session or first protein engineering request:
- Read
references/setup.md— Run through session initialization - Read
references/usage.md— Load execution guidance for the session
Mid-Session Refresh
When you need a reminder on CLI usage, execution patterns, or agent behavior:
- Read
references/usage.mdonly
When to Load References
| Trigger | Action |
|---|---|
| Session start, first Amina request | Load both setup.md and usage.md |
| "How do I use amina...", CLI questions | Load usage.md |
| Job submission, workflow execution | Load usage.md if not already loaded |
| Environment issues, auth problems | Load setup.md |
Quick Reference
# Essential commands
amina tools list # List all tools
amina run <tool> --help # Show parameters
amina run <tool> [params] -o <dir> # Sync execution
amina run <tool> --background --job-name <n> # Async execution
amina jobs cancel <id> # Cancel job (full refund)
amina jobs wait <id> && amina jobs download <id> -o ./Key principle: Run commands automatically, complete workflows end-to-end, never ask unnecessary questions.